foundingGIDE BioImage Hackathon and Workshops

Hackathon on Bioimaging Metadata and Ontology

Event Overview

The foundingGIDE BioImage Hackathon is an exciting gathering of experts from around the globe. The event will address key challenges in making imaging data interoperable and accessible through the use of metadata and ontologies. Participants will collaborate on various projects in flexible team settings, sharing knowledge and practical insights to push the boundaries of bioimaging data management.

Program

Date Schedule Events  
Nov. 4th 10:00-10:30 Welcome & Registry
10:30-11:00 Opening & Logistics
11:00- Introduction & Team Formation (Self-introduction followed by team formation around key focus areas)		 OMERO Workshop 18:00- Dinner
Nov. 5th Working in teams
16:00-17:00 Special Lecture by David Osumi-Sutherland		 ilastik Workshop  
Nov. 6th-7th Continue OMERO Workshop  
Nov. 8th Wrap-up Session (Final presentation and summarization of project outcomes)    

Special Lecture by David Osumi-Sutherland

Suggested Projects include:

  • Ways to make metadata visually understandable and useful
  • Including ontologies in existing workflows
  • Ontologies for bioimage metadata (Use of existing ontologies, Update of existing ontologies, ontology development, etc.)
  • Exploration in embedding varied metadata in OME-NGFF
  • Next-Generation File Format (NGFF)
  • Discussion for preclinical image metadata
  • Ensuring interoperability across bioimaging data resources
  • Call for more topics!

Format

  • Flexible team formation and rotation
  • Full attendance is NOT required, but we encourage active participation in the projects of your interest

Deadline for registration

  • October 4th 6th (Extended), 2024 (JST) with travel support application
  • October 4th 19th (Extended), 2024 (JST)

How to register

How to register foundingGIDE BioImage Hackathon Event Page

Confirmed Participants

Please add your information and theme to this sheet

Venue

  • Building: Integrated Innovation Building (IIB)
  • Address: 6-7-1 Minatojima-minamimachi, Chuo-ku, Kobe, Japan
  • Access: Click here (RIKEN webpage)